How to cite PEPkit
Thanks for citing us! If you use the PEP tools, or concepts in your research, here are papers you can cite.
If you use... | Please cite ... |
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PEP specification | Sheffield et al. (2021) GigaScience |
eido |
Sheffield et al. (2021) GigaScience |
geofetch |
Sheffield et al. (2021) GigaScience; Khoroshevskyi et al. (2023) |
looper |
Sheffield et al. (2021) GigaScience |
PEPhub |
Sheffield et al. (2021) GigaScience; LeRoy et al. (2023) bioRxiv |
peppy |
Sheffield et al. (2021) GigaScience |
pypiper |
Sheffield et al. (2021) GigaScience |
pipestat |
Sheffield et al. (2021) GigaScience |
Full citation information
Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects
GigaScience (2021)
DOI: 10.1093/gigascience/giab077
GEOfetch: a command-line tool for downloading data and standardized metadata from GEO and SRA
Bioinformatics 39 (3), btad069 (2023)
DOI: 10.1093/bioinformatics/btad069
PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata
bioRxiv (2023)
DOI: 10.1101/2023.08.15.551388