Changelog

This project adheres to Semantic Versioning and Keep a Changelog format.

[0.2.4] - 2024-09-30

Fixed

• Fixed eido convert filters for csv and yaml appear to be broken #70
• Fixed error in validating valid sample item in a project #76

Added

• added new tests

[0.2.3] - 2024-09-10

Changed

• bump peppy reqs to 0.40.6
• refactor files_key to sizing, required_files_key to tangible_key, _samples to samples

[0.2.2] - 2023-11-16

Changed

• remove unused exclude-case from CLI. Fixes #65

[0.2.1] - 2023-07-05

Changed

• printing project to logger.debug

[0.2.0] - 2023-06-21

Added

• CLI options for modulating peppy project (#50)

Fixed

• Rewrote history to remove large files committed by mistake
• You can now check for existing of files in subsample table (#26)

Changed

• All validation functions now use similar error-raising behavior
• Validation functions now return all individual error objects grouped by type

[0.1.9] - 2022-09-12

Fixed

• CSV filter bug

Added

• New test cases

[0.1.8] - 2022-08-29

Changed

• the way of merging tables for multiline output format from eido convert

Added

• better architecture for output formatters that goes well with open-closed principle
• using mock in some testcases
• test data in the format that was causing the errors previously

Fixed

• passing plugin keyword arguments to run_filter function
• saving output file will now work for path like file.txt, no need to pass full path

[0.1.7] - 2022-08-11

Changed

• When a validation fails, eido will now return all errors instead of just the first one it finds.

[0.1.6] - 2022-05-16

Added

• a possibility to set a custom sample table index with -s/--st-index option
• an option to see filters docs via CLI: eido filters -f <filter_name>
• PEP filters now return their conversion result for progrommatic use.
• PEP filters can write to files.
• A filter can write multiple outputs to multiple files using the paths keyword arg.

Fixed

• Some error messages with incorrectly defined schemas.
• 'required' attribute is no longer required in schema

Changed

• Moved all eido filter functionality into the eido convert command for simplicity. This way, a single top-level command namespace holds all related functionality. Filters are still EXPERIMENTAL.

[0.1.5] - 2021-04-15

Added

• eido convert converts the provided PEP to a specified format (EXPERIMENTAL! may change in future versions)
• eido filter lists available filters in current environment (EXPERIMENTAL! may change in future versions)
• built-in plugins (EXPERIMENTAL! may change in future versions):
  • basic_pep_filter
  • yaml_pep_filter
  • csv_pep_filter
  • yaml_samples_pep_filter

Changed

• in validate_inputs function sample attributes are first validated for existence before their values' existence is checked

[0.1.4] - 2021-03-14

Changed

• update schema preprocessing

[0.1.3] - 2020-10-07

Changed

• validate_inputs function now returns a dictionary with validation data, i.e missing, required_inputs, all_inputs, input_file_size rather than a list of missing files
• validate_inputs function does not modify Sample objects

[0.1.2] - 2020-08-06

Added

• license in the package source distribution

[0.1.1] - 2020-05-27

Changed

• documentation updates
• CLI behavior when no subcommand provided; #20

[0.1.0] - 2020-05-26

Added

• automatic support for subsamples for sample the following property types:
  • string
  • boolean
  • numeric
• eido inspect CLI command
• schema importing functionality (via top level imports key)
• exported functions:
  • validate_inputs
  • inspect_project
  • read_schema

Changed

• previous CLI eido functionality moved to eido validate

[0.0.6] - 2020-02-07

Changed

• CLI can accommodate URLs.

[0.0.5] - 2020-02-04

Added

• documentation website
• include version in the CLI help

[0.0.4] - 2020-01-31

Added

• validate_sample function for sample level validation
• sample validation CLI support (via -n/--sample-name argument)
• validate_config to facilitate samples exclusion in validation
• config validation CLI support (via -c/--just-config argument)

[0.0.3] - 2020-01-30

Added

• Option to exclude the validation case from error messages in both Python API and CLI app with exclude_case and -e/--exclude-case, respectively.
• include requirements in the source distribution

[0.0.2] - 2020-01-12

Added

• Initial project release