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Uploading PEPs to PEPhub

Learn about how you can start adding PEPs to your namespace on PEPhub.

There are two mains ways to add a PEP to your PEPhub namespace: you can either upload a PEP directly, or you can create a new PEP from scratch using the web interface. This guide will walk you through both methods.

Uploading a PEP

Navigate to your PEPhub namespace (https://pephub.databio.org/{github username}) and click the "Add" button in the top right. Click the "Upload PEP" tab. You will be prompted to select a PEP file from your local machine. Fill in the details about your PEP and then either drag files to the drop zone or click the drop zone to select files from your computer. Click "Submit" to add the PEP to your namespace.

Creating a new PEP from scratch

Navigate to your PEPhub namespace (https://pephub.databio.org/{github username}) and click the "Add" button in the top right. Click the "Blank PEP" tab. Again, fill in the details about your PEP and then you can start filling in the sample table. Click "Submit" to add the PEP to your namespace.

Submission form for a new PEP

Ready to edit your PEP

Once you have uploaded or created a PEP, you can now start using it in pipelines!

Use your PEP in a pipeline