R package: pepr

pepr is an R package for reading Portable Encapsulated Projects. It will read PEP projects, loading all project and sample metadata into R with a single line of code. pepr is currently in alpha mode and should not be used production projects.

Code and documentation

• User documentation and vignettes
• pepr API
• Source code at Github

Quick start

Install from CRAN:

install.packages("pepr")

Load a project and explore metadata like this:

library("pepr")
cfgPath = system.file(
    "extdata",
    paste0("example_peps-master"),
    "example_basic",
    "project_config.yaml",
    package = "pepr"
  )
p = Project(file = cfgPath)

sampleTable(p)
config(p)