Changelog

This project adheres to Semantic Versioning and Keep a Changelog format.

[0.14.0] - 18-09-2024

• Added BEDMS standardizer to PEPhub
• Updated schema endpoints
• Added archive namespace endpoint
• Fixed multiple bugs
• A lot of UI work

[0.13.0] - 25-07-2024

• Added schemas to the PEPhub
• Fixed a lot of ui issues #360

[0.12.0] - 18-07-2024

• Fixed CTRL+K and CTRL+S not working #350
• Added Project history #349
• Fixed PEPhub won't save a table without sample_name #347
• Fixed Moving to 'config' tab loses all unsaved changes in 'samples' tab #346
• Fixed Pasting csv file into pephub yields error #345
• Fixed UI is creating bogus column names when you remove existing columns. #344
• Fixed UI invents a column name #343
• Fixed UI issues with pasting a column header named 'sample_name' #342
• Fixed UI glitch reloads data on save #340
• Added Feature request: Ctrl+S to save #339
• Fixed pephub UI removes samples in progress if you switch to a different tab without saving #338
• Fixed pephub UI cannot delete a sample the intuitive way #337

[0.11.9] - 02-07-2024

[0.11.8] - 02-26-2024

• Fix some bugs introduced as a result of the last release:
  • tag's were being removed from the URL params when selecting a project view
  • stabilized query params along the way on the namespace page

[0.11.7] - 02-22-2024

• Added interface for selecting and viewing project views
• optimized loading of very large sample tables

[0.11.6] - 02-08-2024

Fixed

• Docs and docs links
• Bug in handsontable
• Response errors in samples and views

Added

• Namespace endpoint

[0.11.5] - 02-02-2024

Fixed

• POP updated
• Bug in updating project config file
• Subsample endpoint
• Lots more UI bugs that include some security vulnerabilities and stability issues

[0.11.4] - 01-22-2024

Fixed

• Downloading zip files

[0.11.2] - 01-17-2024

Added

• Add section to /about discussing browser support

[0.11.1] - 01-17-2024

Added

• browserslist support

Changed

• useBiggestNamespaces no longer cached.

[0.11.0] - 01-16-2024

Added

• Group of PEPs, create a new type of PEP called a "POP" (a PEP of PEPs)
• Ability to star/favorite a PEP
• Updated search functionality to be more robust

Changed

• Switch to fastembed for query embeddings to lower container size
• Minor UI updates

[0.10.5] - 12-04-2023

Changed

• optimized web interface fetching of PEP annotation data.

Added

• project annotation endpoint (#234)

[0.10.4] - 10-02-2023

Fixed

• PEP zip downloading

[0.10.3] - 08-31-2023

Changed

• Add support for twitter cards, change some things.

[0.10.2] - 08-31-2023

Changed

• Changed image link for open graph image

[0.10.1] - 08-30-2023

Changed

• Add opengraph image link

[0.10.0] - 08-24-2023

Added

• Date filter to project annotation endpoint

[0.9.9] - 08-22-2023

Changed

• schema tag URL to route to schema splash page

[0.9.8] - 07-24-2023

Fixed

• cant add a PEP to a namespace if you don't have any to begin with

[0.9.7] - 07-24-2023

Fixed

• sample table would exhibit odd, erratic behavior if column names were left blank
• alnding page styling was not optimal

[0.9.6] - 07-20-2023

Fixed

• Upload raw project errors

Changed

• More stylish landing page that exemplifies pephub features
• Better error handling on queries

[0.9.5] - 07-19-2023

Fixed

• Changing sample_name error

Added

• Landing sample table
• UI tweaks
• About page (In progress)
• Sample, subsample, config update simultaneously when saved

Changed

• Landing page

[0.9.4] - 07-18-2023

Fixed

• Typo in tooltip for search bar

Added

• Tooltip on landing page namespace list

Changed

• Styling of landing namespaces to more clearly indicate they are links

[0.9.3] - 07-17-2023

Changed

• Styling updates
• Landing tooltips
• Minor UI updates

[0.9.2] - 07-12-2023

Fixed

• validating was not firing when updating sample table, subsample table, or config

Added

• github organizations UI visibility
• schema tag has link to schema

[0.9.1] - 07-11-2023

Fixed

• forking was broken
• order in config file was incorrect

Added

• config endpoint

[0.9.0] - 07-05-2023

Fixed

• description updating was broken
• strip markdown in description of projects in project list
• sample table stability updates

Added

• better authentication awareness, app now checks for login status on every render, removes session if no longer valid
• added basic subsample table editing
• better validation error messages for universal validator

[0.8.4] - 06-21-2023

Fixed

• lots of sample table editing bugs
• sample table editing now works as expected
• logging in sent you to the homepage no matter what

Changed

• authentication uses localStorage instead of browser cookies
• forking a PEP brings in the description of the PEP
• landing page changes

[0.8.3] - 06-11-2023

Fixed

• schema validation error causing crash in production.

[0.8.2] - 06-11-2023

Fixed

• Dockerfile build error due to missing gcc dependency.

[0.8.1] - 06-11-2023

Fixed

• Dockerfile build error due to psycopg2 issue.

[0.8.0] - 06-09-2023

Fixed

• Sample table editing had bugs
• Width of sample table was incorrect
• Not found projects would load forever
• Case-sensitivity was causing errors
• Search links were not working

Added

• Interface updated to support new features
• Markdwon support for PEPs
• Assign schemas to PEPs
• Ability to sort PEPs on namespace page
• Database setup is now streamlined

Removed

• cli is now deprecated

[0.7.4] - 2022-04-15

Fixed

• Couldnt remove columns from sample table
• Drag n Drop was broken -> now fixed
• Fix sample table editing due to trailing commas
• File upload now fixed

Changed

• Redesign project page for a better user experience
• Key binding for global search is now better

Added

• CSS utility classes for better styling

[0.7.4] - 2022-04-15

Fixed

• Dockerfile not pulling in /public from web/

[0.7.3] - 2022-04-15

Changed

• Fixed dependencies to actually install the cpu only version of torch
• Added new macOS dependencies to support native development/deployment

[0.7.2] - 2022-04-14

Changed

• Fix bug that was deleting images from the frontend

[0.7.1] - 2022-04-14

Changed

• Optimized Dockerfile for faster, slimmer deployments

[0.7.0] - 2022-04-14

Fixed

• Private projects were viewable to those not logged in
• Some projects were causing 500 server errors

Added

• Device authentication flow
• Ability to "fork" a PEP
• Web interface lets you download a zip file of a PEP
• New submission flow for JSON representation of a PEP

Changed

• Reimplemented web interface in React.js
• New deployment strategy that uses uvicorn instead of pip install .

[0.6.0] - 2022-03-06

Fixed

• Buffering configuration file
• Saving failures in production
• Renewed login bug

Added

• Advanced searching features like score, offset, limit
• Ability to add a "blank" PEP
• Web-based metadata builder UI basics

Changed

• Use Authorization Bearer headers to authenticate requests with the API
• Include nunjucks through CDN
• Switch env files to take advantage of pass

[0.5.0] - 2022-01-17

Added

• New landing page
• New namespace page
• Ability to edit PEPs with the new project edit page
• Vector search for PEPs

Changed

• Moved api endpoints to /api/v1

Removed

• Removed /view endpoints

[0.4.0] - 2022-11-09

Added

• Sort PEP's by authentication state (private PEPs)
• New and improbed web validator (thanks Alip!)

Changed

• Revamped pepdbagent with better stability and type safety

[0.3.0] - 2022-09-07

Added

• User authentication to submit PEPs
• More thorough out /view endpoints
• More PEPs 🎉
• Users can now specify a ?tag= query parameter to fetch a PEP by its tag.

Changed

• PEPhub is now backed by a postgres database
• Utilizes pepgbagent to interface with database

[0.2.0] - 2022-06-16

Added

• Better /view endpoints (switch from cards to tables)
• More namespace endpoints
• Sample view endpoints

Fixed

• Poor output of /pep-list
• filters wrapped in json
• pephub version missing

[0.1.0] - 2022-05-16

Added

• Endpoints for converting stored PEPs using filters.
• dotfiles (.pep.yaml) are now standardized
• removed redundant _project representation from endpoints

Fixed:

• project endpoints are no longer case-sensitive
• don't open demo links in new window
• better splash page styling
• no more pinned requirements file

[0.0.1] - 2021-11-03

Added

• Initial release